Introduction
Tumor necrosis factor-like cytokine 1A (TL1A), a membrane costimulatory protein that also exists as a serum cytokine, drives multiple pro-inflammatory and fibrotic pathways relevant to the immunopathogenesis of inflammatory bowel disease (IBD). Intestinal inflammation and chronic mucosal injury are associated with submucosal fibrosis in ulcerative colitis (UC). In ARTEMIS-UC, a phase 2 placebo-controlled, multicenter, double-blind study, the anti-TL1A inhibitory monoclonal antibody PRA023 showed efficacy in adults with moderately to severely active UC. A significantly greater proportion of patients who received PRA023 achieved the primary endpoint of clinical remission at week 12. This study analyzed molecular biomarkers from ARTEMIS-UC patient samples obtained before and after treatment with PRA023 compared to placebo control.
Aims & Methods
Serum and RNAseq data from intestinal mucosal biopsies were analyzed for cytokines and gene expression, respectively, to evaluate the effects of TL1A blockade in 68 UC patients treated with PRA023 and 60 patients treated with placebo during the 12-week induction period. Serum cytokine levels were measured at baseline, weeks 2, 6, and 12, using mesoscale discovery (MSD) multiplexing. Intestinal mucosal biopsy RNAseq data were analyzed at baseline and week 12 using differential gene expression, pathway analysis (gene set variation analysis), and single-cell deconvolution approaches. Pathway signatures were curated from public datasets or derived from in vitro studies. Pharmacodynamic (PD) changes were correlated with modified Mayo score clinical remission, the primary clinical endpoint of the study, defined as an endoscopic score of 0 or 1, rectal bleeding of 0, and stool frequency of 0 or 1 and not greater than baseline.
Results
PRA023 reduced serum levels of T cell-derived cytokines (e.g., IL-5, IL-13, IL-17A, IL-22) and the monocyte/macrophage inflammatory cytokine IL-6 compared to placebo controls (p<0.05). In colonic tissue, 12 weeks of PRA023 treatment significantly reduced the expression of pro-inflammatory cytokine genes and pathways including Th1, Th17, Th2, and inflammatory monocyte gene sets, as well as TL1A-induced CD4+ T cell gene signatures (p<0.05); these changes were not observed in the placebo controls. These PD effects of PRA023 were only statistically significant in patients who achieved clinical remission. PRA023 also reduced the expression of fibrosis-associated genes and signatures in patients who achieved clinical remission (p<0.05). Cell-type deconvolution of bulk RNAseq using IBD single-cell reference datasets showed a reduction in the frequency of proliferating T cells and activated fibroblasts in PRA023-treated patients compared to placebo controls (p<0.01). The percent reduction in these cell types was greater in PRA023-treated patients who achieved clinical remission compared to non-remitters (p<0.0001).
Conclusion
Consistent with a role of TL1A in the immunopathogenesis of UC, biomarker analysis of PRA023-treated UC patients showed a reduction in Th1, Th17, Th2, and activated fibroblast gene signatures and peripheral inflammatory cytokines, providing insights into the mechanism of action of PRA023.
Disclosure
SD has received consultancy fees from AbbVie, Alimentiv, Allergan, Amgen, Applied Molecular Transport, AstraZeneca, Athos Therapeutics, Biogen, Boehringer Ingelheim, Bristol Myers Squibb, Celgene, Celltrion Healthcare, Dr. Falk Pharma, Eli Lilly and Company, Enthera, Ferring, Gilead, Hospira, Inotrem, Janssen, Johnson & Johnson, Morphic, MSD, Mundipharma, Mylan, Pfizer, Roche, Sandoz, Sublimity Therapeutics, Takeda, Teladoc Health, TiGenix, UCB Inc., Vial, and Vifor and lecture fees from AbbVie, Amgen, Ferring, Gilead, Janssen, Mylan, Pfizer, and Takeda.
MA has consulted and/or served on an advisory board for AbbVie Inc, Amgen, Arena Pharmaceuticals, Bristol Myers Squibb, Celsius Therapeutics, Eli Lilly and Company, Gilead Sciences, Janssen Pharmaceuticals, Microba Life Sciences, Pfizer Pharmaceutical, Prometheus Biosciences, UCB Biopharma SRL, and WebMD Global LLC; has taught, lectured and spoken for Alimentiv, Amgen, Janssen Pharmaceuticals, and Takeda Pharmaceuticals.
YW, HL, ED, FT, DDN, and EM are employees and shareholders of Prometheus Biosciences.
BGF has served as a consultant for AbbVie, AbolerIS Pharma, AgomAb, AllianThera, Amgen, AnaptysBio, Applied Molecular Transport, Arena, Avoro Capital Advisors, Atomwise, BIOJAMP, Biora Therapeutics, Boehringer Ingelheim, Boxer, Celsius Therapeutics, Bristol Myers Squibb/Celgene, Connect Biopharma, Cytoki, Disc Medicine, Duality, EcoR1 Capital, Eli Lilly and Company, Equillium, Ermium, First Wave, First Word Group, Galapagos, Galen Atlantica, Genentech/Roche, Gilead, Gossamer Bio, GSK, Hinge Bio, HotSpot Therapeutics, Index Pharma, Imhotex, Immunic Therapeutics, JAK Academy, Janssen, Japan Tobacco, Kaleido, Landos Biopharma, Leadiant, L.E.K. Consulting, Lenczner Slaght, LifeSci Capital, Lument AB, Millennium, MiroBio, Morgan Lewis, Morphic Therapeutics, Mylan, OM Pharma, Origo Biopharma, Orphagen, Pandion Pharma, Pendopharm, Pfizer, Prometheus Therapeutics, PlayToKnow AG, Progenity, Protagonist Therapeutics, PTM Therapeutics, Q32 Bio, Rebiotix, REDX, Roche, Sandoz, Sanofi, Seres Therapeutics, Silverback Therapeutics, Surrozen, Takeda, Teva, Thelium, TiGenix, Tillotts Pharma, Ventyx Biosciences, VHsquared, Viatris, Ysios, Ysopia, Zealand Pharma; on the speaker’s bureau for AbbVie, Janssen, and Takeda; and on advisory boards for AbbVie, Amgen, AMT, AnaptysBio, Boehringer Ingelheim, Bristol Myers Squibb/Celgene, Eli Lilly and Company, Genentech/Roche, Janssen, MiroBio, Origo BioPharma, Pfizer, Prometheus, REDX, Sanofi, Takeda, Tillotts Pharma, Teva, Progenity, Index, EcoR1 Capital, Morphic, GSK, and Axio Research.
BES has served as a consultant for or received speaker’s fees from AbbVie, Abivax, Adiso Therapeutics, Alimentiv, Amgen, Arena Pharmaceuticals, Artizan Biosciences, Artugen Therapeutics, AstraZeneca, Bacainn Therapeutics, Biora Therapeutics, Boehringer Ingelheim, Boston Pharmaceuticals, Bristol Myers Squibb, Calibr, Celltrion Healthcare, ClostraBio, Connect Biopharma, Cytoki Pharma, Eli Lilly and Company, Entera, Evommune, Ferring, Fresenius Kabi, Galapagos, Gilead, Genentech, GSK, Gossamer Bio, HMP Acquisition, Imhotex, Immunic, InDex Pharmaceuticals, Innovation Pharmaceuticals, Inotrem, Ironwood Pharmaceuticals, Janssen, Johnson & Johnson, Kaleido, Kallyope, Merck, MiroBio, Morphic Therapeutic, MRM Health, OSE Immunotherapeutics, Pfizer, Progenity, Prometheus Biosciences, Prometheus Laboratories, Protagonist Therapeutics, Q32 Bio, RedHill Biopharma, Sun Pharma Global, Surrozen, Synlogic, Takeda, Target RWE, Theravance Biopharma R&D, TLL Pharmaceutical, USWM Enterprises, Ventyx Biosciences, and Viela Bio and has received stock options from Ventyx Biosciences.
FR is consultant to or on advisory board of Adiso, Adnovate, Agomab, Allergan, AbbVie, Arena, Astra Zeneca, Boehringer-Ingelheim, Celgene/BMS, CDISC, Celsius, Cowen, Ferring, Galapagos, Galmed, Genentech, Gilead, Gossamer, Granite, Guidepoint, Helmsley, Horizon Therapeutics, Image Analysis Limited, Index Pharma, Landos, Jannsen, Koutif, Mestag, Metacrine, Mopac, Morphic, Organovo, Origo, Palisade, Pfizer, Pliant, Prometheus Biosciences, Receptos, RedX, Roche, Samsung, Sanofi, Surmodics, Surrozen, Takeda, Techlab, Teva, Theravance, Thetis, UCB, Ysios, and 89Bio.
ST has received consulting fees from Robarts Clinical Trials and Prometheus Biosciences and owns stock in Prometheus Biosciences; is a member of steering committees of Janssen, AbbVie, Boehringer Ingelheim, Gilead, Celgene, and Bristol Meyers Squibb; has received speaker honoraria from AbbVie, Takeda, Janssen, Ferring, Pfizer, and Celltrion; and has served on advisory committees of Janssen, Takeda, AbbVie, Eli Lilly, Pfizer, Gilead, Galapagos, and Roche.